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Journal: JCI Insight
Article Title: Impaired T3 uptake and action in MCT8-deficient cerebral organoids underlie Allan-Herndon-Dudley syndrome
doi: 10.1172/jci.insight.174645
Figure Lengend Snippet: ( A ) Schematic of the protocol for COs’ maturation using platelet-derived growth factor AA and insulin-like growth factor 1. ( B – E ) Whole-mount immunolabeling of D65 WT COs containing differentiated NEUROD1 + neurons ( B ), GFAP + neural precursor cells and GFAP-AQP4 + astrocytes ( C and D ), and OLIG2 + oligodendrocyte precursor cells and O4 + premyelinating oligodendrocytes ( E ); in blue is the nuclear staining with DAPI. B : scale bar 75 μm; C : scale bar 75 μm; inset in C : scale bar 25 μm; D : scale bar 40 μm; E : scale bar 75 μm; inset in E : scale bar 40 μm. Arrows in D indicate AQP4 staining in the membrane of GFAP + cells. The arrow in the inset in E points to the cellular body of a representative oligodendrocyte; arrowheads point to its cellular processes. ( F and G ) Volcano plots showing the distribution of DEGs in WT vs. Mut1 ( F ) and in WT vs. Mut2 ( G ); each point represents the average of 3 (WT) or 2 (MCT8-deficient) samples consisting of 4 pooled COs for each transcript. ( H ) Venn comparison of WT vs. Mut1, WT vs. Mut2, and Mut1 vs. Mut2 DEGs. A common cluster (cluster E) between WT vs. Mut1 and WT vs. Mut2 containing 949 DEGs was identified. ( I ) Venn comparison of the 949 DEGs in cluster E shows similar transcriptomic changes in both MCT8-deficient COs. ( J ) Heatmap depicting the top 63 DEGs from cluster E. ( K ) KEGG pathway analysis of the top 63 DEGs in J . ( L – O ) Heatmaps of T3-regulated genes involved in cerebral cortex development ( L ), neural cell migration ( M ), astrocytes and myelination ( N ), and neurotransmitter receptors, transcription factors, potassium channels, and extracellular matrix protein ( O ). DEG thresholds (FDR ≤ 0.25 and fold-change ± 4) were identified by gene set–specific analysis in the Partek Flow platform.
Article Snippet: Immunofluorescence studies were performed as previously described , and COs were incubated with primary and secondary antibodies using the following dilutions: mouse monoclonal anti-Tuj1 1:1,000 (Bio-Techne; AF4320), anti-Sox2 1:1,000 (Abcam; 109186), anti-Ki67 1:1,000 (MilliporeSigma; MAB4190), anti-PVIM 1:400 (MBL; D076-3), anti-PH3 1:400 (Cell Signaling Technology; 9701S), anti-SATB2 1:400 (Abcam; ab92446), anti-Vimentin (Novus; NB300-223), anti-MCT8 antibody 1:400 (Atlas; HPA003353),
Techniques: Derivative Assay, Immunolabeling, Staining, Membrane, Comparison, Migration